Bio-IT-Station


HK Tsai Lab of Bioinformatics

Institute of Information Science, Academia Sinica

News

Old Caoling Tunnel Biking

A delightful lunch and a warm welcome to Serina! Group photo in front of Fulong Train Station — we’re about to start our bike ride! Another shot at the entrance of the Old Caoling Tunnel — little did we know we would end up completing the entire cycling route!

Okinawa APBJC 2024 Conference

Group photo in front of the restaurant with friends from other labs after the conference. Another group shot taken inside the restaurant. Late-night chats at the lodging — this conference trip will be a lifelong memory.

Birthday Party 2024

We gathered to celebrate Dr.Tsai’s birthday — a joyful moment for the whole lab. May this year bring even more success, health, and happiness. Happy birthday!

Projects

TFAS

A bioinformatics-based exploration on the promoter occupancy and alternative splicing in the human genome

LncRNA

Reveal the function of lncRNA on the transcriptional regulation and epigenetic regulation

Lab Members

Principal Investigator

Avatar

Huai-Kuang Tsai

Research Fellow/Professor

Evolutionary Algorithm, Bioinformatics, Regulatory Mechanism, Metagenomics, Computational Biology

Researchers

Avatar

Bing-Shiun Tsai

Research Assistant

Machine Learning, Bioinformatics

Avatar

Kai-Ze Zhu

Research Assistant

Statistical Computation, Machine Learning, Variables Selection in High Dimensional Data, Genomic

Avatar

Shu-Qi Yu

Research Assistant

Bioinformatics, Network, Graph Theory, Algorithm

Grad Students

Avatar

Ru-Yin Jian

Doctoral Student

Machine Learning, Bioinformatics, Cancer

Avatar

Shang-Kok NG

Doctoral Student

Bioinformatics, Cancer

Administration

Visiting Scholars

Avatar

Jia-Hsin Huang

Assistant Professor

Insect Physiology, Bioinformatics, Genomics

Avatar

Wong Jin Yung

Postdoctoral Researcher

Evolution, Genomics, Machine Learning, Biomechanics

Alumni

Recent Publications

Quickly discover relevant content by filtering publications.

Differential Hsp90-dependent gene expression is strain-specific and common among yeast strains

Enhanced phenotypic diversity increases a population’s likelihood of surviving catastrophic conditions. Hsp90, an essential molecular chaperone and a central network hub in eukaryotes, has been observed to suppress or enhance the effects of genetic variation on phenotypic diversity in response to environmental cues. Because many Hsp90-interacting genes are involved in signaling transduction pathways and transcriptional regulation, we tested how common Hsp90-dependent differential gene expression is in natural populations. Many genes exhibited Hsp90-dependent strain-specific differential expression in five diverse yeast strains. We further identified transcription factors (TFs) potentially contributing to variable expression. We found that on Hsp90 inhibition or environmental stress, activities or abundances of Hsp90-dependent TFs varied among strains, resulting in differential strain-specific expression of their target genes, which consequently led to phenotypic diversity. We provide evidence that individual strains can readily display specific Hsp90-dependent gene expression, suggesting that the evolutionary impacts of Hsp90 are widespread in nature.

Short human eccDNAs are predictable from sequences

Background: Ubiquitous presence of short extrachromosomal circular DNAs (eccDNAs) in eukaryotic cells has perplexed generations of …

pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature

With the proliferation of genomic sequence data for biomedical research, the exploration of human genetic information by domain experts …

Contact